Debasisa Mohanty: search on Z-Library

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1

[WORLD SCIENTIFIC Proceedings of the International School of Physics - LERICI, Villa Marigola (7 – 18 July 1997)] Classical and Quantum Dynamics in Condensed Phase Simulations - Dynamics of peptide folding

ELBER, RON, MOHANTY, DEBASISA, SIMMERLING, CARLOS

Language:

english

File:

PDF, 1.87 MB

english

2

RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links

Agrawal, Priyesh, Khater, Shradha, Gupta, Money, Sain, Neetu, Mohanty, Debasisa

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.44 MB

english, 2017

3

Molecular Dynamics Simulations for Deciphering the Structural Basis of Recognition of Pre-let-7 miRNAs by LIN28

Sharma, Chhaya, Mohanty, Debasisa

Journal:

Year:

2017

Language:

english

File:

PDF, 7.87 MB

english, 2017

4

DNA Polymorphism and Local Variation in Base-Pair Orientation: A Theoretical Rationale

Mohanty, Debasisa, Bansal, Manju

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1991

Language:

english

File:

PDF, 806 KB

english, 1991

5

Sequence- and structure-based analysis of proteins involved in miRNA biogenesis

Sharma, Chhaya, Mohanty, Debasisa

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2017

Language:

english

File:

PDF, 2.22 MB

english, 2017

6

erratum: Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria

Trivedi, Omita A., Arora, Pooja, Sridharan, Vijayalakshmi, Tickoo, Rashmi, Mohanty, Debasisa, Gokhale, Rajesh S.

Journal:

Year:

2004

Language:

english

File:

PDF, 81 KB

english, 2004

7

Promiscuous Fatty Acyl CoA Ligases Produce Acyl-CoA and Acyl-SNAC Precursors for Polyketide Biosynthesis

Arora, Pooja, Vats, Archana, Saxena, Priti, Mohanty, Debasisa, Gokhale, Rajesh S.

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 205 KB

english, 2005

8

Correlation between knowledge-based and detailed atomic potentials: Application to the unfolding of the GCN4 leucine zipper

Debasisa Mohanty, Brian N. Dominy, Andrzej Kolinski, Charles L. Brooks III, Jeffrey Skolnick

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 107 KB

english, 1999

9

A machine-learning-based method for prediction of macrocyclization patterns of polyketides and nonribosomal peptides

Agrawal, Priyesh, Mohanty, Debasisa, Martelli, Pier Luigi

Journal:

Year:

2020

File:

PDF, 990 KB

2020

10

Computational Approach for Prediction of Domain Organization and Substrate Specificity of Modular Polyketide Synthases

Gitanjali Yadav, Rajesh S Gokhale, Debasisa Mohanty

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 7.93 MB

english, 2003

11

Structure-based identification of MHC binding peptides: Benchmarking of prediction accuracy

Kumar, Narendra, Mohanty, Debasisa

Journal:

Molecular BioSystems

Year:

2010

Language:

english

File:

PDF, 2.40 MB

english, 2010

12

SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases

Khater, Shradha, Gupta, Money, Agrawal, Priyesh, Sain, Neetu, Prava, Jyoti, Gupta, Priya, Grover, Mansi, Kumar, Narendra, Mohanty, Debasisa

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.20 MB

english, 2017

13

Conformational polymorphism in telomeric structures: Loop orientation and interloop pairing in d(G4TnG4)

Debasisa Mohanty, Manju Bansal

Journal:

Year:

1994

Language:

english

File:

PDF, 1.76 MB

english, 1994

14

Mechanistic and functional insights into fatty acid activation in Mycobacterium tuberculosis

Arora, Pooja, Goyal, Aneesh, Natarajan, Vivek T, Rajakumara, Eerappa, Verma, Priyanka, Gupta, Radhika, Yousuf, Malikmohamed, Trivedi, Omita A, Mohanty, Debasisa, Tyagi, Anil

Journal:

Nature Chemical Biology

Year:

2009

Language:

english

File:

PDF, 762 KB

english, 2009

15

Structure-Based Multiscale Approach for Identification of Interaction Partners of PDZ Domains

Tiwari, Garima, Mohanty, Debasisa

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 2.77 MB

english, 2014

16

Versatile polyketide enzymatic machinery for the biosynthesis of complex mycobacterial lipids

Gokhale, Rajesh S., Saxena, Priti, Chopra, Tarun, Mohanty, Debasisa

Journal:

Natural Product Reports

Year:

2007

Language:

english

File:

PDF, 643 KB

english, 2007

17

Prediction of inter domain interactions in modular polyketide synthases by docking and correlated mutation analysis

Yadav, Gitanjali, Anand, Swadha, Mohanty, Debasisa

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 1.29 MB

english, 2013

18

Role of glycosylation in structure and stability of Erythrina corallodendron lectin (EcorL): A molecular dynamics study

Sandeep Kaushik, Debasisa Mohanty, Avadhesha Surolia

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 2.61 MB

english, 2011

19

Mechanism of Autophosphorylation of Mycobacterial PknB Explored by Molecular Dynamics Simulations

Damle, Nikhil P., Mohanty, Debasisa

Journal:

Year:

2014

Language:

english

File:

PDF, 23.62 MB

english, 2014

20

Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria

Trivedi, Omita A., Arora, Pooja, Sridharan, Vijayalakshmi, Tickoo, Rashmi, Mohanty, Debasisa, Gokhale, Rajesh S.

Journal:

Year:

2004

Language:

english

File:

PDF, 559 KB

english, 2004

21

Novel Intermolecular Iterative Mechanism for Biosynthesis of Mycoketide Catalyzed by a Bimodular Polyketide Synthase

Chopra, Tarun, Banerjee, Srijita, Gupta, Sarika, Yadav, Gitanjali, Anand, Swadha, Surolia, Avadhesha, Roy, Rajendra P., Mohanty, Debasisa, Gokhale, Rajesh S., Moore, Bradley

Journal:

Year:

2008

Language:

english

File:

PDF, 730 KB

english, 2008

22

Genome scale prediction of substrate specificity for acyl adenylate superfamily of enzymes based on active site residue profiles

Pankaj Khurana, Rajesh S Gokhale, Debasisa Mohanty

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.64 MB

english, 2010

23

Inter-domain movements in polyketide synthases: a molecular dynamics study

Anand, Swadha, Mohanty, Debasisa

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 6.55 MB

english, 2012

24

In silico identification of AMPylating enzymes and study of their divergent evolution

Khater, Shradha, Mohanty, Debasisa

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 3.90 MB

english, 2015

25

Molecular Dynamics Simulations on Pars Intercerebralis Major Peptide-C (PMP-C) Reveal the Role of Glycosylation and Disulfide Bonds in its Enhanced Structural Stability and Function

Kaushik, Sandeep, Mohanty, Debasisa, Surolia, Avadhesha

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2012

Language:

english

File:

PDF, 2.83 MB

english, 2012

26

Fatty acyl-AMP ligases and polyketide synthases are unique enzymes of lipid biosynthetic machinery in Mycobacterium tuberculosis

Debasisa Mohanty, Rajan Sankaranarayanan, Rajesh S. Gokhale

Journal:

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

27

Conformational polymorphism in G-tetraplex structures: strand reversal by base flipover or sugar flipover

Mohanty, Debasisa, Bansal, Manju

Journal:

Nucleic Acids Research

Year:

1993

Language:

english

File:

PDF, 719 KB

english, 1993

28

modPDZpep: a web resource for structure based analysis of human PDZ-mediated interaction networks

Neetu Sain,Debasisa Mohanty

Journal:

Year:

2016

Language:

english

File:

PDF, 2.95 MB

english, 2016

29

Versatility of polyketide synthases in generating metabolic diversity

Rajesh S Gokhale, Rajan Sankaranarayanan, Debasisa Mohanty

Journal:

Current Opinion in Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

30

In silico methods for linking genes and secondary metabolites: The way forward

Khater, Shradha, Anand, Swadha, Mohanty, Debasisa

Journal:

Synthetic and Systems Biotechnology

Year:

2016

Language:

english

File:

PDF, 2.06 MB

english, 2016

31

An In Silico Analysis of the Binding Modes and Binding Affinities of Small Molecule Modulators of PDZ-Peptide Interactions

Tiwari, Garima, Mohanty, Debasisa, Taylor, Paul

Journal:

Year:

2013

Language:

english

File:

PDF, 3.31 MB

english, 2013

32

corrigendum: Enzymic activation and transfer of fatty acids and acyl-adenylates in mycobacteria

Trivedi, Omita A., Arora, Pooja, Sridharan, Vijayalakshmi, Tickoo, Rashmi, Mohanty, Debasisa, Gokhale, Rajesh S.

Journal:

Year:

2004

Language:

english

File:

PDF, 69 KB

english, 2004

33

Towards Prediction of Metabolic Products of Polyketide Synthases: An In Silico Analysis

Yadav, Gitanjali, Gokhale, Rajesh S., Mohanty, Debasisa, Ranganathan, Rama

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 2.01 MB

english, 2009

34

Deciphering molecular basis of functional divergence in AMPylating enzymes by MD simulations and structure guided phylogeny

Khater, Shradha, Mohanty, Debasisa

Journal:

Year:

2015

Language:

english

File:

PDF, 4.00 MB

english, 2015

35

De novo predictions of the quaternary structure of leucine zippers and other coiled coils

Jeffrey Skolnick, Andrzej Kolinski, Debasisa Mohanty

Journal:

International Journal of Quantum Chemistry

Year:

1999

Language:

english

File:

PDF, 200 KB

english, 1999

36

In silicoanalysis of methyltransferase domains involved in biosynthesis of secondary metabolites

Mohd Zeeshan Ansari, Jyoti Sharma, Rajesh S Gokhale, Debasisa Mohanty

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 4.79 MB

english, 2008

37

Modeling holo-ACP:DH and holo-ACP:KR complexes of modular polyketide synthases: a docking and molecular dynamics study

Anand, Swadha, Mohanty, Debasisa

Journal:

BMC Structural Biology

Year:

2012

Language:

english

File:

PDF, 3.62 MB

english, 2012

38

Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water

Debasisa Mohanty, Ron Elber, Devarajan Thirumalai, Dimitrii Beglov, Benoit Roux

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 434 KB

english, 1997

39

Dissecting the Mechanism and Assembly of a Complex Virulence Mycobacterial Lipid

Omita A. Trivedi, Pooja Arora, Archana Vats, Mohd. Zeeshan Ansari, Rashmi Tickoo, Vijayalakshmi Sridharan, Debasisa Mohanty, Rajesh S. Gokhale

Journal:

Year:

2005

Language:

english

File:

PDF, 622 KB

english, 2005

40

Hairpin and parallel quartet structures for telomeric sequences

Balagurumoorthy, P., Brahmachari, Samir K., Mohanty, Debasisa, Bansal, Manju, Sasisekharan, V.

Journal:

Nucleic Acids Research

Year:

1992

Language:

english

File:

PDF, 1.03 MB

english, 1992

41

Understanding the molecular basis of substrate binding specificity of PTB domains

Sain, Neetu, Tiwari, Garima, Mohanty, Debasisa

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.37 MB

english, 2016

42

The Role of Metal Ions in Substrate Recognition and Stability of Concanavalin A: A Molecular Dynamics Study

Kaushik, Sandeep, Mohanty, Debasisa, Surolia, Avadhesha

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 1.90 MB

english, 2009

43

De Novo Simulations of the Folding Thermodynamics of the GCN4 Leucine Zipper

Mohanty, Debasisa, Kolinski, Andrzej, Skolnick, Jeffrey

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 256 KB

english, 1999

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